Difference between revisions of "NucleoATAC"

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(Created page with "Category:SoftwareCategory:biologyCategory:bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|nucleoatac}} |{{#vardefine:url|https://github.com/Green...")
 
 
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[[Category:Software]][[Category:biology]][[Category:bioinformatics]]
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[[Category:Software]][[Category:biology]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|nucleoatac}}
 
|{{#vardefine:app|nucleoatac}}
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
 
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
  
ython package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).
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Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).
  
 
<!--Modules-->
 
<!--Modules-->
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 20:08, 12 August 2022

Description

nucleoatac website  

Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).

Environment Modules

Run module spider nucleoatac to find out what environment modules are available for this application.

System Variables

  • HPC_NUCLEOATAC_DIR - installation directory
  • HPC_NUCLEOATAC_BIN - executable directory




Citation

If you publish research that uses nucleoatac you have to cite it as follows:

Schep, Alicia N., et al. "Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions." Genome research 25.11 (2015): 1757-1770.