Difference between revisions of "NGS-SDK"

From UFRC
Jump to navigation Jump to search
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Category:Software]][[Category:biology]][[Category:bioinformatics]][[Category:ncbi]][[Category:library]]
+
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:Programming]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|ngs-sdk}}
 
|{{#vardefine:app|ngs-sdk}}

Latest revision as of 17:11, 19 August 2022

Description

ngs-sdk website  

NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines".

Environment Modules

Run module spider ngs-sdk to find out what environment modules are available for this application.

System Variables

  • HPC_NGS-SDK_DIR - installation directory
  • HPC_NGS-SDK_BIN - executable directory
  • HPC_NGS-SDK_LIB - library directory
  • HPC_NGS-SDK_INC - includes directory
  • HPC_NGS-SDK_JAVA - java bindings directory
  • HPC_NGS-SDK_PYTHON - python bindings directory