Difference between revisions of "NGS-SDK"
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(Created page with "Category:SoftwareCategory:biologyCategory:bioinformaticsCategory:ncbiCategory:sdkCategory:library {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ng...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_LIB - library directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_INC - includes directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_JAVA - java bindings directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_PYTHON - python bindings directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:22, 6 December 2019
Description
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines".
Environment Modules
Run module spider ngs-sdk to find out what environment modules are available for this application.
System Variables
- HPC_NGS-SDK_DIR - installation directory
- HPC_NGS-SDK_BIN - executable directory
- HPC_NGS-SDK_LIB - library directory
- HPC_NGS-SDK_INC - includes directory
- HPC_NGS-SDK_JAVA - java bindings directory
- HPC_NGS-SDK_PYTHON - python bindings directory