Difference between revisions of "MHAP"
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Revision as of 20:58, 10 November 2015
Description
MHAP (pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).
Required Modules
Serial
- mhap
System Variables
- HPC_{{#uppercase:mhap}}_DIR - installation directory