Difference between revisions of "MGEScan"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:58, 10 June 2022
Description
MGEScan on Galaxy is the latest version of MGEScan to identify long terminal repeats (LTR) and non-LTR retroelements in eukaryotic genomic sequences on a web interface or on a command line. HMMER v3.1b1 and openMPI are supported for MGEScan-LTR and MGEScan-nonLTR programs so the better performance is guaranteed than previous version of MGEScan. Cloud image is available on Amazon Cloud (EC2) to utilize on-demand computing resources for data analysis.
Environment Modules
Run module spider mgescan to find out what environment modules are available for this application.
System Variables
- HPC_MGESCAN_DIR - installation directory