Difference between revisions of "MGEScan"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:BilogyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mgescan}} |{{#vardefine:url|https://github.com/MGEScan/mgescan...")
 
Line 1: Line 1:
[[Category:Software]][[Category:Bilogy]][[Category:Genomics]]
+
[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|mgescan}}
 
|{{#vardefine:app|mgescan}}

Revision as of 18:44, 14 April 2016

Description

mgescan website  

MGEScan on Galaxy is the latest version of MGEScan to identify long terminal repeats (LTR) and non-LTR retroelements in eukaryotic genomic sequences on a web interface or on a command line. HMMER v3.1b1 and openMPI are supported for MGEScan-LTR and MGEScan-nonLTR programs so the better performance is guaranteed than previous version of MGEScan. Cloud image is available on Amazon Cloud (EC2) to utilize on-demand computing resources for data analysis.

Required Modules

Serial

  • mgescan

System Variables

  • HPC_{{#uppercase:mgescan}}_DIR - installation directory