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magma-gwas website  

MAGMA is a tool for gene analysis and generalized gene-set analysis of GWAS data. It can be used to analyse both raw genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis.

Environment Modules

Run module spider magma-gwas to find out what environment modules are available for this application.

System Variables

  • HPC_MAGMA-GWAS_DIR - installation directory
  • HPC_MAGMA-GWAS_BIN - executable directory