LoRMA
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Description
LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines.
Environment Modules
Run module spider lorma to find out what environment modules are available for this application.
System Variables
- HPC_LORMA_DIR - installation directory
Additional Information
LoRMA needs to be launched for access to LoRMA and lordec binaries. Run the programs listed below with
module load lorma launch_lorma <executable> <arguments>
where executables include
- h5dump
- lordec-build-SR-graph
- lordec-correct
- lordec-stat
- lordec-trim
- lordec-trim-split
- LoRMA
- lorma.sh
Citation
If you publish research that uses lorma you have to cite it as follows:
L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016.