Difference between revisions of "LDhat"

Latest revision as of 17:09, 10 June 2022

Description

LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.

Environment Modules

Run module spider ldhat to find out what environment modules are available for this application.

System Variables

HPC_LDHAT_DIR - installation directory

Additional Information

The following programs are included:

convert: Simple manipulation of DNA sequence data
pairwise: Parametric and nonparametric analyses of recombination
interval: Estimation of variable recombination rates
rhomap: Estimation of variable recombination rates in the presence of hotspots
fin: Simulation of genetic variation data in LDhat format

@@ Line 21: / Line 21: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==