Difference between revisions of "LDhat"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ldhat}} |{{#vardefine:url|https://github.com/auton1/LDhat}} <...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 35: | Line 35: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:21, 6 December 2019
Description
LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.
Required Modules
Serial
- ldhat
System Variables
- HPC_LDHAT_DIR - installation directory
Additional Information
The following programs are included:
- convert: Simple manipulation of DNA sequence data
- pairwise: Parametric and nonparametric analyses of recombination
- interval: Estimation of variable recombination rates
- rhomap: Estimation of variable recombination rates in the presence of hotspots
- fin: Simulation of genetic variation data in LDhat format