Difference between revisions of "LDhat"
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Revision as of 13:02, 15 September 2015
Description
LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.
Required Modules
Serial
- ldhat
System Variables
- HPC_{{#uppercase:ldhat}}_DIR - installation directory
Additional Information
The following programs are included:
- convert: Simple manipulation of DNA sequence data
- pairwise: Parametric and nonparametric analyses of recombination
- interval: Estimation of variable recombination rates
- rhomap: Estimation of variable recombination rates in the presence of hotspots
- fin: Simulation of genetic variation data in LDhat format