Illumina-utils
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Description
This is a small library and a bunch of clients to perform various operations on FASTQ files (such as demultiplexing raw Illumina files, merging partial or complete overlaps, and/or performing quality filtering). It works with paired-end FASTQ files and has been tested with Illumina runs processed with CASAVA version 1.8.0 or higher.
Required Modules
Serial
- gcc/5.2.0
- illumina-utils
System Variables
- HPC_{{#uppercase:illumina-utils}}_DIR - installation directory
- HPC_{{#uppercase:illumina-utils}}_BIN - executable directory
Citation
If you publish research that uses illumina-utils you have to cite it as follows: