Difference between revisions of "Hifiasm"
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Latest revision as of 22:23, 27 August 2020
Description
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce primary/alternate assemblies of quality competitive with the best assemblers. It also introduces a new graph binning algorithm and achieves the best haplotype-resolved assembly given trio data.
Environment Modules
Run module spider hifiasm to find out what environment modules are available for this application.
System Variables
- HPC_HIFIASM_DIR - installation directory
- HPC_HIFIASM_BIN - executable directory