HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to just work with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read technologies or protocols, with slow or inaccurate performance on others. With this in mind, HapCUT2 is designed for speed and accuracy across diverse sequencing technologies
module spider HapCUT2 to find out what environment modules are available for this application.
- HPC_HAPCUT2_DIR - installation directory
- HPC_HAPCUT2_BIN - executable directory
If you publish research that uses HapCUT2 you have to cite it as follows:
Edge, P., Bafna, V. & Bansal, V. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies. Genome Res. gr.213462.116 (2016). doi:10.1101/gr.213462.116