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genmap website  

Ultra-fast Computation of Genome Mappability (GenMap) computes the uniqueness of k-mers for each position in the genome while allowing for upto e mismatches.

Environment Modules

Run module spider genmap to find out what environment modules are available for this application.

System Variables

  • HPC_GENMAP_DIR - installation directory
  • HPC_GENMAP_BIN - executable directory


If you publish research that uses genmap you have to cite it as follows:

Reginato M. 2022. A pipeline for assembling low-copy nuclear markers from plant genome skimming data for phylogenetic use. PeerJ 10:e14525