Difference between revisions of "Genmap"
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
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Ultra-fast Computation of Genome Mappability (GenMap) computes the uniqueness of k-mers for each | Ultra-fast Computation of Genome Mappability (GenMap) computes the uniqueness of k-mers for each | ||
position in the genome while allowing for upto e mismatches. | position in the genome while allowing for upto e mismatches. | ||
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<!--Modules--> | <!--Modules--> | ||
==Environment Modules== | ==Environment Modules== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | If you use this pipeline and or the companion R package please cite: | |
| + | Reginato M. 2022. A pipeline for assembling low-copy nuclear markers from plant genome skimming data for phylogenetic use. PeerJ 10:e14525 https://doi.org/10.7717/peerj.14525 | ||
|}} | |}} | ||
Revision as of 21:08, 17 May 2023
Description
Ultra-fast Computation of Genome Mappability (GenMap) computes the uniqueness of k-mers for each position in the genome while allowing for upto e mismatches.
Environment Modules
Run module spider genmap to find out what environment modules are available for this application.
System Variables
- HPC_GENMAP_DIR - installation directory