Difference between revisions of "GTDBTk"
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Revision as of 14:15, 2 January 2019
Description
GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is computationally efficient and designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.
Environment Modules
Run module spider gtdbtk to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:gtdbtk}}_DIR - installation directory
Citation
If you publish research that uses gtdbtk you have to cite it as follows:
https://github.com/Ecogenomics/GtdbTk#references