Difference between revisions of "FAR"

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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 
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|{{#vardefine:app|far}}
 
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Latest revision as of 18:54, 12 August 2022

Description

far website  

FAR is a software that removes adapter sequences from your sequencing reads by overlap alignment using the Needleman Wunsch algorithm (default) or a quality-based variant of the Needleman Wunsch algorithm. The Needleman Wunsch algorithm is a global exact string-matching algorithm, which offers maximal sensitivity and outperforms heuristic algorithm such as BLAST. Therefore the alignment of an adapter sequence to a read is very accurate.

Environment Modules

Run module spider far to find out what environment modules are available for this application.

System Variables

  • HPC_FAR_DIR - installation directory
  • LD_LIBRARY_PATH - run time library path