Difference between revisions of "DynamicDBG"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}})_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory

Revision as of 20:23, 5 July 2019


dynamicdbg website  

Compact data structures for the representation of de Bruijn graphs are important for genome sequence assembly. A fully dynamic data structure supporting efficient and exact membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and not dynamic nodes).

Environment Modules

Run module spider dynamicdbg to find out what environment modules are available for this application.

System Variables

  • HPC_{{#uppercase:dynamicdbg}}_DIR - installation directory
  • HPC_{{#uppercase:dynamicdbg}}_BIN - executable directory