Difference between revisions of "DVGfinder"

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[[Category:Software]]
 
[[Category:Software]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:dvgfinder|dvgfinder}}
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|{{#vardefine:app|dvgfinder}}
|{{#vardefine:https://mjmaolu.github.io/DVGfinder/|https://mjmaolu.github.io/DVGfinder/}}
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|{{#vardefine:url|https://github.com/MJmaolu/DVGfinder}}
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 
|{{#vardefine:conf|}}          <!--CONFIGURATION-->
 
|{{#vardefine:conf|}}          <!--CONFIGURATION-->
|{{#vardefine:exe|}}            <!--ADDITIONAL INFO-->
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|{{#vardefine:exe|1}}            <!--ADDITIONAL INFO-->
 
|{{#vardefine:job|}}            <!--JOB SCRIPTS-->
 
|{{#vardefine:job|}}            <!--JOB SCRIPTS-->
 
|{{#vardefine:policy|}}        <!--POLICY-->
 
|{{#vardefine:policy|}}        <!--POLICY-->
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<!--Run-->
 
<!--Run-->
 
{{#if: {{#var: exe}}|==Additional Information==
 
{{#if: {{#var: exe}}|==Additional Information==
 +
To run DVGfinder:
 +
$ git clone https://github.com/MJmaolu/DVGfinder.git
 +
$ cd DVGfinder
 +
$ chmod -R +x .
 +
$ module load dvgfinder
 +
Follow the DVGfinder README 'Usage' instructions
  
WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY
 
  
 
|}}
 
|}}

Latest revision as of 13:59, 31 July 2023

Description

dvgfinder website  

DVGfinder is a tool that integrates the most used DVGs search algorithms, ViReMa-a and DI-tector, in a unique workflow, making the analysis of a sample easier and more intuitive. Also, DVGfinder_v3 implements a Gradient Boosting classifier to try to reduce the number of false positives introduced by the search algorithms and generates an HTML report with interactive tables and plots that facilitates a first exploration of the results.

Environment Modules

Run module spider dvgfinder to find out what environment modules are available for this application.

System Variables

  • HPC_DVGFINDER_DIR - installation directory
  • HPC_DVGFINDER_BIN - executable directory


Additional Information

To run DVGfinder:

$ git clone https://github.com/MJmaolu/DVGfinder.git
$ cd DVGfinder
$ chmod -R +x .
$ module load dvgfinder

Follow the DVGfinder README 'Usage' instructions