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clover website  

Clover is a clustering-oriented de novo assembler for Illumina sequences, which bases on the de Bruijn graph method and utilizes a novel k-mer clustering approach from the overlap-based concept to improve the robustness with respect to sequencing error especially using large k-mers.Clover achieves a superior assembly quality in terms of corrected N50 and E-size.

Environment Modules

Run module spider clover to find out what environment modules are available for this application.

System Variables

  • HPC_CLOVER_DIR - installation directory
  • HPC_CLOVER_BIN - executable directory