Difference between revisions of "CLIPSeqTools"
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Revision as of 13:49, 1 February 2016
Description
CLIPSeqTools is a collection of command line applications used for the analysis of CLIP-Seq datasets. CLIP-Seq stands for UV cross-linking and immunoprecipitation coupled with high-throughput sequencing.
CLIPSeqTools has applications for a wide range of analyses that will give an in depth view of the analysed dataset. Examples of such analyses are: genome read coverage, distibution of reads on genic elements, motif enrichment, relative position of reads of two datasets, differential gene counts, etc).
Required Modules
Serial
- clipseqtools
System Variables
- HPC_{{#uppercase:clipseqtools}}_DIR - installation directory