MATS
Revision as of 19:06, 10 August 2012 by Moskalenko (talk | contribs)
Description
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns.
Required Modules
Serial
- mats
System Variables
- HPC_{{#uppercase:mats}}_DIR - installation directory
- HPC_MATS_BIN - executable directory