FragGeneScan
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Description
FragGeneScan is an application for finding (fragmented) genes in short reads.
Required Modules
Serial
- fraggenescan
- HPC_FRAGGENESCAN_BIN - executable directory.
Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary.
Read the usage documentation for details on how to run the program.
Citation
Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747