Structure

Description

structure website  

Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers

You will have to provide the mainparams and extraparams files in a working directory from which you run the software. Sample files are located in $HPC_STRUCTURE_CONF directory.

Execution Environment and Modules

To use structure with the environment modules system at HPC the following commands are available:

Get module information for structure:

$module spider structure

Load the default application module:

$module load structure

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

• HPC_STRUCTURE_DIR - directory where structure is located.
• HPC_STRUCTURE_BIN - executable directory
• HPC_STRUCTURE_DOC - documentation directory
• HPC_STRUCTURE_CONF - directory with sample configuration files