Cobretti

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Description

cobretti website  

Script for high-throughput discovery and characterization of RNA motifs.

  • Includes:

ViennaRNA (https://github.com/ViennaRNA/ViennaRNA)

ScanFold (https://github.com/moss-lab/ScanFold)

Knotty (https://github.com/HosnaJabbari/Knotty)

Iterative HFold (https://github.com/HosnaJabbari/Iterative-HFold)

RNAFramework (https://github.com/dincarnato/RNAFramework)

Infernal (https://github.com/EddyRivasLab/infernal)

cm-builder (https://github.com/dincarnato/labtools)

R-scape 2.0.0.k (https://github.com/EddyRivasLab/R-scape)

Environment Modules

Run module spider cobretti to find out what environment modules are available for this application.

System Variables

  • HPC_COBRETTI_DIR - installation directory
  • HPC_COBRETTI_BIN - executable directory






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