Cobretti
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Description
Script for high-throughput discovery and characterization of RNA motifs.
- Includes:
ViennaRNA (https://github.com/ViennaRNA/ViennaRNA)
ScanFold (https://github.com/moss-lab/ScanFold)
Knotty (https://github.com/HosnaJabbari/Knotty)
Iterative HFold (https://github.com/HosnaJabbari/Iterative-HFold)
RNAFramework (https://github.com/dincarnato/RNAFramework)
Infernal (https://github.com/EddyRivasLab/infernal)
cm-builder (https://github.com/dincarnato/labtools)
R-scape 2.0.0.k (https://github.com/EddyRivasLab/R-scape)
Environment Modules
Run module spider cobretti
to find out what environment modules are available for this application.
System Variables
- HPC_COBRETTI_DIR - installation directory
- HPC_COBRETTI_BIN - executable directory