Subphaser
Revision as of 20:42, 28 April 2023 by Perera (talk | contribs) (Created page with "Category:Software Category:Sequencing Category:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|subphaser}} |{{#vardefine:url|https://github.com/zhangren...")
Description
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers
Environment Modules
Run module spider subphaser to find out what environment modules are available for this application.
System Variables
- HPC_SUBPHASER_DIR - installation directory
- HPC_SUBPHASER_BIN - executable directory
Citation
If you publish research that uses subphaser you have to cite it as follows:
Jia K, Wang Z, Wang L et. al. SubPhaser: A robust allopolyploid subgenome phasing method based on subgenome-specific k-mers [J]. New Phytologist, 2022, in press DOI:10.1111/nph.18173