FastGEAR

Description

fastgear website  

FastGEAR is a software for analyzing sequence alignments.

Environment Modules

Run module spider fastgear to find out what environment modules are available for this application.

System Variables

• HPC_FASTGEAR_DIR - installation directory
• HPC_FASTGEAR_BIN - executable directory

Additional Information

Run fastGear in your job script as

fastGear <INPUT_FILE> <OUTPUT_FILE> <INPUT_SPECS_FILE>

Note: <OUTPUT_FILE> must have a '.mat' extension as required in the manual.

Citation

If you publish research that uses fastgear you have to cite it as follows:

Mostowy, R., Croucher, N.J., Andam, C.P., Corander, J., Hanage, W.P. and Marttinen, P. (2017). Efficient inference of recent and ancestral recombination within bacterial populations. Molecular Biology and Evolution, 34(5), 1167-1182.