Circlator

Description

circlator website  

A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript.

Environment Modules

Run module spider circlator to find out what environment modules are available for this application.

System Variables

• HPC_CIRCLATOR_DIR - installation directory

Citation

If you publish research that uses circlator you have to cite it as follows:

"Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology 2015 Dec 29;16(1):294. doi: 10.1186/s13059-015-0849-0. PMID: 26714481.