Ont tutorial cas9
Revision as of 18:38, 2 June 2022 by Israel.herrera (talk | contribs) (Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ont_tutorial_cas9}} |{{#vardefine:url|https://github.com/nanoporetech/ont_tu...")
Description
The Evaluation of read-mapping characteristics from a Cas-mediated PCR-free enrichment tutorial demonstrates a workflow for mapping long DNA sequence reads to a reference genome, and evaluates the performance of a Cas9 based target enrichment strategy. This workflow is suitable for Oxford Nanopore fastq sequence collections and requires a reference genome and a BED file of target coordinates.
Environment Modules
Run module spider ont_tutorial_cas9 to find out what environment modules are available for this application.
System Variables
- HPC_ONT_TUTORIAL_CAS9_DIR - installation directory