GTDBTk

Description

gtdbtk website  

GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is computationally efficient and designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.

Environment Modules

Run module spider gtdbtk to find out what environment modules are available for this application.

System Variables

• HPC_GTDBTK_DIR - installation directory
• HPC_GTDBTK_BIN - executable directory
• GTDBTK_DATA_PATH - reference database

Citation

If you publish research that uses gtdbtk you have to cite it as follows:

https://github.com/Ecogenomics/GtdbTk#references