CodonPhyML

Description

[REPLACE REPLACE website]  

codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE).

Environment Modules

Run module spider REPLACE to find out what environment modules are available for this application.

System Variables

• HPC_REPLACE_DIR - installation directory
• HPC_REPLACE_BIN - executable directory

Citation

If you publish research that uses REPLACE you have to cite it as follows:

https://academic.oup.com/mbe/article/30/6/1270/1134508