FastQTL

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Description

fastqtl website  

FastQTL is a QTL mapper with several notable features:

  • Fast: with a permutation scheme relying on Beta approximation. No need to perform millions of permutations to reach low significance levels, only 100 to 1,000 are needed!
  • Flexible: association testing is implemented w/o qualitative/quantitative covariates. Phenotypes can be internally quantile normalized.
  • User-friendly: only standard file formats are used and easy-to-use options implemented.
  • Cluster-friendly: parallelization is easy to set up for large deployment on compute clusters.

Environment Modules

Run module spider fastqtl to find out what environment modules are available for this application.

System Variables

  • HPC_FASTQTL_DIR - installation directory
  • HPC_FASTQTL_BIN - executable directory
  • HPC_FASTQTL_DOC - documentation directory
  • HPC_FASTQTL_EXE - example directory






Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=FastQTL&oldid=20298"