PRINSEQ++
Revision as of 18:11, 15 April 2020 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|prinseq++}} |{{#vardefine:url|https://github.com/Adrian-Cantu/PRINSEQ-plus-p...")
Description
Chan chan PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used to filter, reformat or trim genomic and metagenomic sequence data. It is 5X faster than prinseq-lite.pl and uses less RAM thanks to the use of multi-threading and the cboost libraries. It can read and write compressed (gzip) files, drastically reducing the use of hard drive.
Environment Modules
Run module spider prinseq++ to find out what environment modules are available for this application.
System Variables
- HPC_PRINSEQ++_DIR - installation directory
- HPC_PRINSEQ++_BIN - executable directory