SWSC-EN
Revision as of 14:46, 8 January 2020 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|swsc-en}} |{{#vardefine:url|https://github.com/Tagliacollo/PFinderUCE-SWSC-E...")
Description
The accuracy of phylogenetic inferences often depends on choosing an appropriate model of molecular evolution. In Tagliacollo & Lanfear (submitted), we evaluated the performance of two new partitioning methods for phylogenomics studies of UCES, and conclude that automatic selection of partitions through the SWSC-EN method considerably improves model-fit and parameter estimates. This repository contains scripts to run the SWSC-EN method on your own alignments. For more information about the method, please see the accompanying paper, and the repository for replicating the analyses in that paper.
Environment Modules
Run module spider swsc-en to find out what environment modules are available for this application.
System Variables
- HPC_SWSC-EN_DIR - installation directory
- HPC_SWSC-EN_BIN - executable directory
- HPC_SWSC-EN_EXE - example directory