TraCeR
Revision as of 21:29, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
This tool reconstructs the sequences of rearranged and expressed T cell receptor genes from single-cell RNA-seq data. It then uses the TCR sequences to identify cells that have the same receptor sequences and so derive from the same original clonally-expanded cell.
Required Modules
Serial
- tracer
System Variables
- HPC_TRACER_DIR - installation directory
Additional Information
To copy and use your own tracer config file use $ cp $HPC_TRACER_DIR/tracer.conf .