Structure

Description

structure website  

Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers

You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:

• -m /path/to/mainparams
• -e /path/to/extraparams
• -s /path/to/STRATparams

Sample files are located in the$HPC_STRUCTURE_CONF directory.

Required Modules

modules documentation

Serial

• structure

System Variables

• HPC_STRUCTURE_DIR - installation directory
• HPC_STRUCTURE_BIN - executable directory
• HPC_STRUCTURE_DOC - documentation directory
• HPC_STRUCTURE_CONF - directory with sample configuration files

Validation

• Validated 4/5/2018