GTDBTk
Revision as of 21:21, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is computationally efficient and designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.
Environment Modules
Run module spider gtdbtk to find out what environment modules are available for this application.
System Variables
- HPC_GTDBTK_DIR - installation directory
Citation
If you publish research that uses gtdbtk you have to cite it as follows:
https://github.com/Ecogenomics/GtdbTk#references