FragGeneScan
Revision as of 21:20, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
FragGeneScan is an application for finding (fragmented) genes in short reads.
Required Modules
Serial
- fraggenescan
System Variables
- HPC_FRAGGENESCAN_DIR - installation directory
- HPC_FRAGGENESCAN_BIN - executable directory.
Additional Information
Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary.
Read the usage documentation for details on how to run the program.
Citation
Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747
Validation
- Validated 4/5/2018