NOVOPlasty

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Description

novoplasty website  

NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.

Environment Modules

Run module spider novoplasty to find out what environment modules are available for this application.

System Variables

  • HPC_{{#uppercase:novoplasty}}_DIR - installation directory
  • HPC_{{#uppercase:novoplasty}}_BIN - executable directory
  • HPC_{{#uppercase:novoplasty}}_DOC - documentation directory
  • HPC_{{#uppercase:novoplasty}}_EXE - example directory
  • HPC_{{#uppercase:novoplasty}}_CONF - config directory
  • HPC_{{#uppercase:novoplasty}}_CIRC - circos directory




Citation

If you publish research that uses novoplasty you have to cite it as follows:

Dierckxsens N., Mardulyn P. and Smits G. (2016) NOVOPlasty: De novo assembly of organelle genomes from whole genome data. Nucleic Acids Research, doi: 10.1093/nar/gkw955


Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=NOVOPlasty&oldid=18262"