NGS-SDK
Revision as of 20:11, 22 February 2018 by Giljael (talk | contribs) (Created page with "Category:SoftwareCategory:biologyCategory:bioinformaticsCategory:ncbiCategory:sdkCategory:library {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ng...")
Description
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines".
Environment Modules
Run module spider ngs-sdk to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:ngs-sdk}}_DIR - installation directory
- HPC_{{#uppercase:ngs-sdk}}_BIN - executable directory
- HPC_{{#uppercase:ngs-sdk}}_LIB - library directory
- HPC_{{#uppercase:ngs-sdk}}_INC - includes directory
- HPC_{{#uppercase:ngs-sdk}}_JAVA - java bindings directory
- HPC_{{#uppercase:ngs-sdk}}_PYTHON - python bindings directory