SALSA
Revision as of 16:51, 16 October 2017 by Moskalenko (talk | contribs)
Description
A tool to scaffold long read assemblies with Hi-C
Required Modules
Serial
- gcc/5.2.0
- salsa
System Variables
- HPC_{{#uppercase:salsa}}_DIR - installation directory
Citation
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.