TEToolkit
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Description
TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. It then performs differential analysis using DESeq.
Required Modules
Serial
- gcc/5.2.0
- tetoolkit
System Variables
- HPC_{{#uppercase:tetoolkit}}_DIR - installation directory
- HPC_{{#uppercase:tetoolkit}}_BIN - executable directory