Search results

• Biopieces
  ...downstream Biopieces until the data stream is terminated at the end of the analysis as outlined below: * BP_DATA - biopieces data directory
  3 KB (410 words) - 15:40, 10 December 2021
• BEAGLE
  ...is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of sample *phase genotype data (i.e. infer haplotypes) for unrelated individuals, parent-offspring pairs,
  5 KB (615 words) - 15:36, 14 December 2022
• QTLtools
  ...olecular QTL discovery and analysis. It allows to go from the raw sequence data to collection of molecular Quantitative Trait Loci (QTLs) in few easy-to-pe ...068635 Delaneau et al. A complete tool set for molecular QTL discovery and analysis.]
  2 KB (297 words) - 20:58, 21 August 2022
• Healthcare and Life Sciences
  ...science, including medical image analysis, disease detection, and genomic data interpretation, through [https://support.rc.ufl.edu/ support requests] or [ ...very that simplifies and accelerates the training of models using your own data and scaling the deployment of models for drug discovery applications.
  4 KB (521 words) - 16:00, 14 May 2024
• Biology
  ..., in our turn, will provide the hardware and software support for the data analysis pipeline they create for you. ...T databases, which serve both Galaxy and the command line blast see <code>/data/reference/blast/db</code>.
  4 KB (665 words) - 21:23, 14 December 2022
• HTSeq
  HTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays. ...ntation chapter A tour through HTSeq] first for an overview on the kind of analysis you can do with HTSeq and the design of the package, and then look at the r
  3 KB (411 words) - 19:05, 12 August 2022
• Lima
  ...ltiplexing. This new tool provides a better end-to-end user experience for analysis of multiplexed samples.
  3 KB (299 words) - 19:57, 15 August 2022
• Gephi
  ...ecognized to facilitate reasoning. This is a software for Exploratory Data Analysis, a paradigm appeared in the Visual Analytics field of research.
  3 KB (337 words) - 17:42, 11 January 2023
• CellRanger
  ...ds, generate gene-cell matrices and perform clustering and gene expression analysis. Cell Ranger 1.2 supports libraries generated by the Chromium Single Cell 3 * HPC_{{uc:{{#var:app}}}}_REF - reference data directory
  2 KB (294 words) - 18:24, 12 August 2022
• RepeatAnalysisTools
  This repository contains instructions for processing and repeat analysis of sequence data generated with the PacBio No-Amp Targeted Sequencing
  4 KB (430 words) - 16:55, 15 December 2022
• PGDSpider
  ...meters or statistics for specific regions, and thus perform sliding window analysis over large genomic regions. ...t/28/2/298.full Lischer HEL and Excoffier L (2012) PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs. B
  3 KB (387 words) - 19:04, 10 June 2022
• QualiMap
  ...d-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. *rnaseq - Evaluate RNA-seq alignment data
  3 KB (326 words) - 19:32, 24 August 2022
• Pyrpipe
  ...ed on local computers or on HPC environments to manage analysis of RNA-Seq data. Users can use the easy-to-use APIs to popular bioinformatic tools provided
  3 KB (311 words) - 15:22, 16 March 2020
• GWAMA
  ...tions via meta-analysis, without direct exchange of genotype and phenotype data. ...11-288 Magi R, Morris AP: GWAMA: software for genome-wide association meta-analysis. BMC Bioinformatics 2010, 11:288.]
  3 KB (322 words) - 13:33, 26 May 2020
• ClinicaDL
  ...th neurological and psychiatric diseases and the acquisition of multimodal data (neuroimaging, clinical and cognitive evaluations, genetics...), most often ...x, PETPVC, SPM), machine learning (Scikit-learn) and the BIDS standard for data organization.
  3 KB (323 words) - 13:41, 15 August 2022
• GenGen
  ...free software tools to facilitate the analysis of high-throughput genomics data sets. The package is currently a work-in-progress and infrequently updated. .../S0002-9297(07)63775-6 Wang K, Li M, Bucan M. Pathway-based approaches for analysis of genome-wide association studies. American Journal of Human Genetics, 81:
  3 KB (326 words) - 17:36, 10 June 2022
• Alphaimpute
  ...bForAlphaImpute (Kerr and Kinghorn, 1996). All information on the model of analysis, input files and their layout, is specified in a single parameter file.
  3 KB (337 words) - 12:37, 12 August 2022
• Ssr pipeline
  ...llites conforming to user specified parameters. Each of the three separate analysis modules also can be used independently to provide greater flexibility or to ...ughput DNA sequence data (ver. 1.1, February 2014): U.S. Geological Survey Data Series 778.
  4 KB (501 words) - 18:55, 6 June 2022
• REMORA
  [[Category:Software]][[Category:Performance Analysis]][[Category:Performance Analysis]] * CPU Power and Temperature data
  3 KB (330 words) - 20:39, 24 August 2022
• LIQA
  LIQA (Long-read Isoform Quantification and Analysis) is an Expectation-Maximization alternative splicing (DAS) events using long-read RNA-seq data. LIQA incorporates
  3 KB (319 words) - 20:03, 15 August 2022

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