Search results

• HybPiper
  ...dner, E. M., Liu, Y., Medina, R., Goffinet, B., Shaw, A. J., Zerega, N. J. C, and Wickett, N. J. (2016). HybPiper: Extracting Coding Sequence and Intron
  3 KB (349 words) - 18:36, 10 June 2022
• UCSC
  ...much more. Library subroutines are available for everything from managing C data structures such as linked lists, balanced trees, hashes, and directed
  3 KB (349 words) - 20:53, 12 August 2022
• Nipype
  Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS. (2011). Nipype: a flexible, li
  3 KB (348 words) - 20:07, 12 August 2022
• Sdsl
  The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. In total, the library co
  3 KB (350 words) - 17:47, 15 August 2022
• Theano
  * dynamic C code generation – Evaluate expressions faster.
  3 KB (345 words) - 15:58, 6 June 2022
• Humann2
  ...gart G, Schwarzberg Lipson K, Knight R, Caporaso JG, Segata N, Huttenhower C. Species-level functional profiling of metagenomes and metatranscriptomes.
  3 KB (348 words) - 22:26, 27 August 2020
• Aquamis
  Deneke, C.; Brendebach, H.; Uelze, L.; Borowiak, M.; Malorny, B.; Tausch, S.H.
  3 KB (348 words) - 22:07, 20 October 2023
• R Benchmark 2.5
  | Linear regr. over a 3000x3000 matrix (c = a \ b') || 12.57 || 5.92 || 1.37 || 0.41
  2 KB (216 words) - 20:33, 15 August 2022
• CONSEL
  CONSEL is a program package consists of small programs written in C language. It calculates the probability value (i.e., p-value) to assess the
  3 KB (375 words) - 18:43, 10 June 2022
• ALLMAPS
  ...biomedcentral.com/articles/10.1186/s13059-014-0573-1 Tang H, Zhang X, Miao C, Zhang J, Ming R, Schnable J, Schnable P, Lyons E, Lu J. (2015) ALLMAPS: ro
  3 KB (361 words) - 21:11, 6 December 2019
• NeEstimator
  ...rary_effective_population_size_Ne_from_genetic_data_Mol_Ecol_Resour_14 Do, C., Waples, R. S., Peel, D., Macbeth, G. M., Tillett, B. J. & Ovenden, J. R.
  3 KB (375 words) - 19:56, 12 August 2022
• ANGSD
  ...specially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.
  3 KB (355 words) - 12:42, 12 August 2022
• IOAPI
  ...mming library for data storage and access, available from both Fortran and C. The same routines can be used for both file storage (using netCDF files) a
  2 KB (341 words) - 19:35, 24 August 2022
• Using SSH Keys To Access HPG
  **<pre>ssh-keygen -o -a 100 -t ed25519 -f ~/.ssh/id_ed25519 -C "Comment to make the key recognizable among many"</pre> **<pre>ssh-keygen -t ed25519 -C "Comment to make the key recognizable among many"</pre>
  6 KB (1,087 words) - 18:54, 29 March 2024
• ResFinder
  ...Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup FM. Journal of Antimicrobial Chemotherapy. 2020 Aug 11.
  3 KB (342 words) - 18:41, 23 April 2021
• VTK
  ...D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk,
  3 KB (360 words) - 20:55, 12 August 2022
• VirusDetect
  ...rect.com/science/article/pii/S0042682216303166 Zheng Y, Gao S, Padmanabhan C, Li R, Galvez M, Gutierrez D, Fuentes S, Ling K-S, Kreuze J, Fei Z (2017) V
  3 KB (377 words) - 23:22, 30 July 2020
• ROOTPy
  ...interacting with ROOT in Python should not feel like you are still writing C++.
  3 KB (389 words) - 16:49, 21 August 2022
• FALCON
  ...for haploid and diploid genomes. It has some back-end code implemented in C for speed and some simple front-end written in Python for convenience.
  3 KB (395 words) - 15:19, 15 August 2022
• Cowast
  ...rs MPI enabled. At HiperGator we use OPENMPI. In addition, matching netcdf-c, netcdf-f and HDF5 modules must be present.
  3 KB (443 words) - 13:28, 27 March 2024

View (previous 20 | next 20) (20 | 50 | 100 | 250 | 500)