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• LZO
  LZO is a portable lossless data compression library written in ANSI C.
  3 KB (317 words) - 20:38, 10 June 2022
• Bigslice
  ...' (or '''B'''iosynthetic '''G'''ene clusters - '''S'''uper '''Li'''near '''C'''lustering '''E'''ngine) is a tool designed to cluster massive numbers of
  3 KB (295 words) - 21:25, 14 September 2023
• ADMB
  AD Model Builder, or ADMB, is a C++ application which implements AD using specialized classes and operator ov
  3 KB (302 words) - 20:49, 11 August 2022
• ATLAS
  software. The current version provides a complete BLAS API (for both C and
  3 KB (317 words) - 15:19, 12 August 2022
• PHAST
  ...reconstruction of ancestral sequences. It consists of over 60,000 lines of C code.
  3 KB (320 words) - 17:17, 10 June 2022
• DecontaMiner
  ...aMiner must be present in your configure.txt file (which is passed by the -c option when you run decontaMiner.sh). In order to use the pre-loaded tools
  3 KB (321 words) - 14:56, 2 March 2021
• TRUST4
  ...solid tissues, including tumors. TRUST4 performs de novo assembly on V, J, C genes including the hypervariable complementarity-determining region 3 (CDR
  3 KB (314 words) - 20:12, 8 February 2021
• SSH Multiplexing
  ControlPath ~/.ssh/control/%C
  2 KB (342 words) - 13:40, 26 June 2023
• P4est
  ...est.github.io/papers/BursteddeWilcoxGhattas11.pdf Carsten Burstedde, Lucas C. Wilcox, and Omar Ghattas, p4est: Scalable Algorithms for Parallel Adaptive
  3 KB (320 words) - 17:24, 10 June 2022
• VeryFastTree
  ...formatics/article/36/17/4658/5861530 César Piñeiro, José M. Abuín and Juan C. Pichel. Bioinformatics, vol. 36, no. 17, pages 4658-4659, 2020.]
  3 KB (329 words) - 21:03, 12 February 2021
• Bamm
  ...ology 2014, and Evolution 2015). BAMM is a command line program written in C++. Post-run analysis and visualization is performed using the R package BAM
  3 KB (322 words) - 18:00, 12 August 2022
• MRtrix
  ...felt, R. Tabbara, T. Dhollander, M. Pietsch, D. Christiaens, B. Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software frame
  3 KB (311 words) - 20:34, 24 August 2022
• GPU Access
  ...dia CUDA Toolkit]] page. The current CUDA environment is cuda/11. However, C++ or Python packages numba and PyCuda are other ways to program GPU algorit mamba install cudatoolkit=11.3 pytorch=1.12.1=gpu_cuda* -c pytorch
  5 KB (767 words) - 20:15, 16 April 2024
• Emerald
  emeraLD v0.1 (c) 2018 corbin quick (corbinq@gmail.com)
  3 KB (324 words) - 19:16, 29 October 2023
• Silo
  compile $(CC) -c yourfile.c and link with $(CLINKER) -o yourprog
  3 KB (356 words) - 17:28, 10 June 2022
• REMORA
  [http://dl.acm.org/citation.cfm?id=2834999 C. Rosales, A. Gómez-Iglesias, A. Predoehl. "REMORA: a Resource Monitoring T
  3 KB (330 words) - 20:39, 24 August 2022
• Gawk
  ...e discarding the rest. To write a program to do this in a language such as C or Pascal is a time-consuming inconvenience that may take many lines of cod
  3 KB (356 words) - 16:55, 15 August 2022
• IsoSel
  ...id=10.1371/journal.pone.0174250 Philippon H., Souvane A., Brochier-Armanet C. and Perrière, G. (2017) IsoSel: Protein Isoform Selector for Phylogenetic
  3 KB (345 words) - 14:29, 26 March 2021
• TGICL
  launch_tgicl tgicl -F sample.fasta -q sample.qual -c 4
  3 KB (340 words) - 20:47, 12 August 2022
• Finesse
  Finesse is written in C and is compiled into a single binary executable called 'kat'. Today the pre
  3 KB (347 words) - 00:01, 9 July 2020

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