Sputnik

Description

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Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors. Template:App Location

Available versions

• 1.0

Running the application using modules

To use sputnik with the environment modules system at HPC the following commands are available:

Get module information for sputnik:

$module spider sputnik

Load the default application module:

$module load sputnik

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

• HPC_SPUTNIK_DIR - directory where sputnik is located.