MATS

Description

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MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. Template:App Location

Available versions

• 2.1.0

Running the application using modules

To use mats with the environment modules system at HPC the following commands are available:

Get module information for mats:

$module spider mats

Load the default application module:

$module load mats

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

• HPC_MATS_DIR - directory where mats is located.
• HPC_MATS_BIN - executable directory