Rnabloom

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Description

RNA-Bloom website  

RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types: 

   single-end/paired-end bulk RNA-seq (strand-specific/agnostic)
   paired-end single-cell RNA-seq (strand-specific/agnostic)
   long-read RNA-seq (ONT cDNA/direct RNA, PacBio cDNA)


Environment Modules

Run module spider RNA-Bloom to find out what environment modules are available for this application.

System Variables

  • HPC_RNA-BLOOM_DIR - installation directory
  • HPC_RNA-BLOOM_BIN - executable directory






Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=Rnabloom&oldid=29036"